NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209333_1001063

Scaffold Ga0209333_1001063


Overview

Basic Information
Taxon OID3300027676 Open in IMG/M
Scaffold IDGa0209333_1001063 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14067
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012043Metagenome / Metatranscriptome284Y
F069101Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209333_10010634F012043GGAGGMADQQISFHPTLAVEAVFEQVKPLQDQLAQIASILGPIGQLSELGSVFEPLRQFGTEIKELAKLLEPMRSFQDQLRQVLNQFGPLQALDQELDQLSEEFCQSLSQLAAALEPAVTLQDRLAHLAKAFEPAKTLREDFSALAQGFERSSQGLPEASLKYREASQPRDQSAG
Ga0209333_10010635F012043GGAMATQRTSFEPGLAVSTIFDQIGPLQEQLAQIVVILEPIQQLSELASVFEPLREFEERIRDLAKVLAPMHNFQDQLQQVLKQFSPLETLDQELSQLCLSFRESLSQLATALEPAAALQDRLVHLCTAFEPAKALRQEFSALARIFERSSTDLPH
Ga0209333_10010636F069101N/AMILFDIKDDLYGPPSNEREDSNAFGARLAVSEVFDQLEPLRAQLARIGSFHEPMQRLGELANVFDELRKFAMQVSDLARVLESMHNFQDRLRPVPNQFAPLEALDEKLKRLCASFAEHLSELANALGPAVTLQDQLSQLASAFEPAKVLREEFLGLAQSFALRPPAMSDGRNGSSGVLRKSPPR
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