NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209333_1001707

Scaffold Ga0209333_1001707


Overview

Basic Information
Taxon OID3300027676 Open in IMG/M
Scaffold IDGa0209333_1001707 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10278
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006391Metagenome / Metatranscriptome374Y
F019865Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0209333_10017072F019865GGAGGMEVIWLAALILGSGFAIASGQGAKWKILNAVIILACMGLGAGLGYAVGLGSENMGFVRNQGVPFAMMFGIVGAMACVARNTSSSKG
Ga0209333_10017074F006391GAGGVDEKVKKDVPKFDWVTERSSCSTPKVFKELRLQVEEDIKTRNALRPNNSPYEFSVKENGDDFAVLLEAKDVHRSVIFSLAEHAILVRDDKGHQMFEVTLTFNDEGKCRLHVNKEERDLWQVRRMALEELLFRGY
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