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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027677 Open in IMG/M |
| Scaffold ID | Ga0209019_1000802 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15890 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (75.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 8.0 | Long. (o) | -156.0 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003827 | Metagenome / Metatranscriptome | 466 | Y |
| F005883 | Metagenome / Metatranscriptome | 387 | Y |
| F017842 | Metagenome / Metatranscriptome | 238 | Y |
| F019664 | Metagenome / Metatranscriptome | 228 | Y |
| F041261 | Metagenome | 160 | Y |
| F051978 | Metagenome / Metatranscriptome | 143 | Y |
| F076182 | Metagenome / Metatranscriptome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209019_100080215 | F003827 | AGAAG | MAEGRWADWQVRQIAENMAEKCPKRDWFDGDDENYLTSLKSWSHITARNLFSMELEERQLIIFIHHLGIEHVGVQTFDPQDTRQHSDFVPHEGRHDYNSPPLDIQPK |
| Ga0209019_100080218 | F017842 | GGA | MPTYVMKDPDGMEHEFICSISAMEKKKTEGWTTVFSPAKNNLIGHTGDVISHTSQGWKDVLRNIKSNVPGSNIDTG |
| Ga0209019_10008022 | F051978 | GAGG | MEYIIYSSLILITLICLWVLISIPKNYLFKSLLVPIMIVVAVSTWYTYNAILGYGTEFKPVKEVVYHSHVADKRNGVIYILLTEFGDVEPRLHIYPWSEDLEKQMQGADGQQQQGIMVVGNFKRKDDPSGTRPLPDDEEWQFYMMPPNEYMPKE |
| Ga0209019_100080222 | F019664 | N/A | VKGTDDGKTIDGQDAGAIPATSTNSREMYQGIFRFAKAMNTYYYTPSEWSRSIGWGKVPDKRNTELRGVKQDRLTDENLQEDSDTKT |
| Ga0209019_100080226 | F005883 | N/A | MLEQITTFGKQGMVYRRGHQIVLENERTGEHVAVKVVQYDSMQGWLAENGEGDWQWYHEKDNQNWPEDTEFWKYIKKVGT |
| Ga0209019_10008023 | F041261 | AGG | MKIHDCPCDSCKSRVKCGREATECKAVRQYYDRGWYNTDFVGVKLKLMKGYKKGHYIV |
| Ga0209019_100080232 | F076182 | AGGAG | MKKFLIALMLMIPMSAYALDVDFVSDVTVASHGVSIGLDQDGNAFSVGAGGLTVSTSDTSQIGVEYASTIWGVTGSASYDYTSDDEHALGFDTSTTLWGIELDAGIDWNIDDASFDGTLGTGYSMFGLDGSATTNWDIDDFAYEGMDVTAGYTWAVTDSFSVRPNLTIPFDDDFGRGDLTAGVSISLSFGSNSSE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |