NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209011_1000001

Scaffold Ga0209011_1000001


Overview

Basic Information
Taxon OID3300027678 Open in IMG/M
Scaffold IDGa0209011_1000001 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519263
Total Scaffold Genes472 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)376 (79.66%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006644Metagenome / Metatranscriptome368Y
F009457Metagenome317Y
F013798Metagenome / Metatranscriptome268Y
F057623Metagenome136Y
F082192Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209011_1000001218F006644N/AMGLMSPAKQSATDAAVELAGRLTEALQRERIVPRFVDSYVVEHGRHGLQVHAALYRDLLALLQREALIAVSVHAMEIVTTDFQPTARSKPRPMVKKDAAAYRRKYLGALARHQKWSMGDALDFQKDFQIYEELIARSASGRRRKPFEAANHPFVDRCAFLLDSSFLEKARVAASRALTSLEELTEQVVSTLM
Ga0209011_1000001299F057623GGAGGMESVNNRLSGRFGLPVLVVSEWLMVLPAALFLAAATLRMLQPRQFEPARTSWIIFDWTMTHISRFGAAILFVGMPGIVVVAGCATLLRTWRQDRALREDVTMTISTLRRHLVFGSLMAAVLLGGTILTAVVIHLVAD
Ga0209011_1000001301F013798GGAGMNVACKDRDRIFEDGAAAEWAALEGHAAACPPCAEELRAWKSLSLAAAELRDYTESPALWPRIRFALAEEAERSARRGWSWRRFFASPSLSWQTAAATALVVVLMFSGGWLLRPTKKLPIQQGSLLKSKTLLDVEHAQSAYVQAIDKLAADAKPQLDNPATPLMANYREKLFMLDTAIDDLRAQTGQNPSNAHLRYQLLAMYQEKQRTLEELLEEKR
Ga0209011_100000133F082192N/AMVTHAERAHVGEATASAGSTIYDGDRLSTEAGGELRTSSAALTLQLNAQTILTVRHPASPEGNTTAELASGTLVFSAAPTGNIVVVANDALIRPAATAPAVAHIRVVNRKEVRIYAQRGALEFSYHGESEVIPEGAAYRILLDPSEREVAVAPEAEQARKKTAKWHHRFLFLVIGIAGGVAIPVLMHHVESPDRPGPPS
Ga0209011_100000183F009457AGGLLKEQQQSELSRIRVSFAGAADFKAKIKIPARGKEFLMRLLLHATRWAAALLIVCITLALAVARDKSVWSYEGGLFVITNGSLPKGPCFRLAGRVTSGDFFDSLKRIDKESGTIFRRGSENVENFPDQLTLSFLVRDHYDQTCPPREGNPGAPKYLTRTMMSSLHLYLYWKRGVELRPVENVERKYFAVRQIIPQAAAQVHDLPERLEWAYEYVVPSAGVPLTDSLVLVLRDDDNHIVARVAARL
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