NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209011_1000027

Scaffold Ga0209011_1000027


Overview

Basic Information
Taxon OID3300027678 Open in IMG/M
Scaffold IDGa0209011_1000027 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)117573
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (78.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F013331Metagenome / Metatranscriptome272Y
F021873Metagenome / Metatranscriptome217Y
F028629Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0209011_10000271F000703N/AMLVRDYQESDLAQLRAIHMSQGFDYALPDLNNPLFVTKLVLTQRDASPVVAQHAAPLQRAATQSAGGEESIVGAALLRLTAEAYLLLDPRTGTPRQRWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAKKFGKRLARLGWVRDDAWTPYCKKLQTTE
Ga0209011_100002721F028629GGAGGVKNLGSLMAAYMIGWGVFFIYFVTVARRTADLRKDVERLKQSLTRGK
Ga0209011_10000274F000624N/AMGWLTAAVPVAVQFVIFLRWLHRRMRNDEITRAFVRDIATNHLPHIYNALQKIAAEQGIELDETPLVQFIDLNHRRRS
Ga0209011_100002764F013331N/AVRIGQADNLSGVAGVGEYFLISGEAGIENDFAAAARDRAGRAAVKDAPVFQRENRGSVRNFRQCVLPCSF
Ga0209011_100002792F021873GGAGGVENPFDIMKVQSDDSLAWLEAAEELSAARFRVWELLADSPGEYIIFNQETKTLVAHFSIHEAPQTPEWWRRDDECLEELQPAVAALDDDYDEYLEELQPAVA
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