NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209011_1014411

Scaffold Ga0209011_1014411


Overview

Basic Information
Taxon OID3300027678 Open in IMG/M
Scaffold IDGa0209011_1014411 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2609
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017765Metagenome239Y
F029691Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0209011_10144112F029691GAGGLNRSRGQSALYAVLLMPTLILILALAVDMAGLQMQKLRLRYAVDLATVTAATLVDAPYYSRTGRLQLDPVTATATAREYLVRNLTGMPDVAAPRAIAATADISIVNRTPAIDPYTGGHLDRPAICARIRVPYRFMLLGWVGFNQVELVIAADAEIRT
Ga0209011_10144116F017765N/AAPRLLQAILSGLTAGSTYLDALRQARLSCTDPWIREDLDYVIQRFLLDVPLHESLQTVRARVMTRNLGLIWETLLIGAANQLPTQAARTLFSELSSTVQFNVQLANEVRARSSGQRAQIWLLAVIVPGMYLYLRLMSPQLLSVLDETTVGRYVLFPLAAALEVMGLVLSFRITRFET
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.