NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209626_1053621

Scaffold Ga0209626_1053621


Overview

Basic Information
Taxon OID3300027684 Open in IMG/M
Scaffold IDGa0209626_1053621 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1011
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026653Metagenome / Metatranscriptome197Y
F072557Metagenome121Y
F086059Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209626_10536211F026653AGGAVLRRLEAFVFFFAMMLAVTLEGACVYWMCGHPRPYATTESSLNFVGEWTGLALPQGWLLGALLALIYRVTAMFFPPRSWTDNEFLQNQRAFLRLWRWAMALVAMQGLTLFLGLAAAAL
Ga0209626_10536212F072557GGAGGMLRDDLQKRPDLGFRRTVADHLLEPLSPFDSNSVRRPQRWFVFFSIVSLAAVGAVVYFNFWN
Ga0209626_10536213F086059N/ALETAKPTKKPVEVVIRDLYEGDGRVLVRYAVRNRGSRDYDVTTPKVYLLPGARYPQSLYSLVHSQLGDQEAARLTIKQETPVPVLEGQVQSPHLAPGQESVGVVAVHLPASTEPTVLRFQFEDDDRQRIAAFLVR
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