Scaffold Ga0209554

Basic Information
Taxon OID	3300027685 Open in IMG/M
Scaffold ID	Ga0209554_1027613 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209554_1027613 Open in IMG/M

Source Dataset Name

Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2305
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2305

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-37.9728	Long. (^o)	-44.9905	Alt. (m)	Depth (m)	5110
Location on Map

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Source Dataset Sampling Location

Location Name

South Atlantic Ocean

Coordinates

Lat. (^o)

-37.9728

Long. (^o)

-44.9905

Alt. (m)

Depth (m)

5110

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F012921	Metagenome / Metatranscriptome	276	Y
F101353	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209554_10276131	F012921	AGG	MADEFDFGFSAVSTEEFSKTQTVTEVQPSTASSEEFDELKKKLDSISSLIQTLGDREDTSLFDETGETVKANGEKIARVEDKVDKILAMESSQVASALEEQGSSIRAVI
Ga0209554_10276133	F101353	GGA	MIRFKQYLKEAQAPFNTRSMIFVNYESPALILSSTMIDRIFGQTKVDAWHVTDLDGLKGLKRIEGKKSSISVLTDIEPGRVKIFTKGVETGGGYCVSLEGSLLVSADFDIYSERLEGGRRAIAIESETYPNLYKDMIKMQDKMWNKYGEKGKLDAGQDFNKLGNSLTQKQKGQFVKEWIDNCESILMKNKKAQEELRKFGRSDWSTYNESVINQIKIKRIYVINDNKLERFGKSYELAKKEFKDVIEVTSKRMGEIIKK
Ga0209554_10276134	F001493	N/A	RFKQYLKEAPPAWTESLSTMLFDLPRAGLKDLKIPLSSPIFKRLWPESIRSKVFHLTDFTGVGKLKRLQGGKKSISAFYNMDDYIISDGIKSEGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTWSTLLDPIHSNGMGGESKLKKMEKDLQDLLVEILIKNGMGPYKKGLTIRELNKAWIYLGKSTGGKEKSVIIKNYIDGMEKIMKKYSKPLRSIFTDYTKKRTLDPDEDSGERAMWDELVVNNFKIQKIHVGPEFADDFRDDDDIEGFPFEVYEDEGSLVDYIARTVLDIKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209554_1027613

Overview

Ecosystem & Geography

Associated Families

Sequences