NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1110475

Scaffold Ga0209710_1110475


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1110475 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050679Metagenome / Metatranscriptome145N
F077486Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_11104751F050679N/AMANKTKKDPKVIAEIMEELATGASIRSCLSPRNKNPARPCWQSFRLWMAKDNNLRKDYEVAKTDGIEYLLSDATDTINEALENSKFKEKTDLGQTHLIKSFIDLTKWKSERLAPKSYLKKDQLQVFGSDSSPLIVKWDK
Ga0209710_11104752F077486N/AMLNHLDSLLIESERNNMFRNNKISSNTVNMFKLDIVKIYAKKDKLKDILKCPKLQKKHRLQDFKPIHSN
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