NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209553_1025866

Scaffold Ga0209553_1025866


Overview

Basic Information
Taxon OID3300027688 Open in IMG/M
Scaffold IDGa0209553_1025866 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2474
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033788Metagenome176Y
F042898Metagenome157Y
F059635Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0209553_10258662F033788N/AMEILNTIWTVISIFSVIFTVMFVYYFIKNVRAELNLNKDVKKFKQTVKLVYVEQVDGMYRMHDKFTHHYICQAATEKELWDIADIRFPNVKVLTTSISAEVTKQ
Ga0209553_10258663F042898GGAGMAKSKLTIRVHDTNKINTIAEWCKANLEAHEWDMTAINLINPPDYKFHFECDKTRLQVILQHL
Ga0209553_10258664F059635AGGAGMKHWWADIKLFVLNTWHKYSTWIKFFLKDLTHDLKIDENGDLRLFVFVFVYLVFSVVGAYNFAHLTAFLYIVWLLEKRHGKK
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