NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209551_1005642

Scaffold Ga0209551_1005642


Overview

Basic Information
Taxon OID3300027689 Open in IMG/M
Scaffold IDGa0209551_1005642 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4507
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001125Metagenome / Metatranscriptome769Y
F002387Metagenome / Metatranscriptome565Y
F007468Metagenome / Metatranscriptome350Y
F013414Metagenome / Metatranscriptome271Y
F033433Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209551_100564210F033433AGGAMYNKPSLEILEVNYSCSPGGVDEFEVYSTDERDFADYPLYSSESLAKAVEYCYQLGKDFTVRTVAEWEERELAYEARG
Ga0209551_100564214F013414AGGCGGMKTPEQKVAEQLTNLTEDHWFNAASLARYLTDQPYYTTDRIMELVAQIIKWGGRRHEDELTPSGVYESNTSSEGLFLANELSKTLDRLTKNYKWENLKLPVDTKKAIAKLPKVEEQSYRYSWIHDTDNRIKVTIDHPFI
Ga0209551_10056424F001125AGGCGGMGDRANFGFRDSKGDTLYLYGHWAGHNMLANLASAVSAAEPRWQDESYATRICISNLVGEEWAQTTGWGLSINGILDNEHKVPVIDWTNKTFTLMEEDLSTVVFSLSLADFVQKYSRLVM
Ga0209551_10056426F002387AGGAGGMASFLEDVNQMVIDACYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDEFIYGEFNKFYNLKEGDEDYLC
Ga0209551_10056428F007468GGAGGLTTQTKSSKFIEYMKIHLISLEQDLESNPESINVIDIPGQIYATRHLLSVATDIMNDNLQGKGY
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