NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209551_1010138

Scaffold Ga0209551_1010138


Overview

Basic Information
Taxon OID3300027689 Open in IMG/M
Scaffold IDGa0209551_1010138 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3285
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F015600Metagenome / Metatranscriptome253Y
F022197Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0209551_10101384F007691N/AMTQTINTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAFYAGIEVG
Ga0209551_10101387F022197AGGAMDTTQDPTMYANYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMVDELSWDDAQWDIEENVFVPELGVWTTK
Ga0209551_10101389F015600GAGGMKTTELEPRLQKLVDNGESGTDILHGELKNLMLEAETDYIEIEAEEREGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAISDRIKKNG
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