NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209551_1011171

Scaffold Ga0209551_1011171


Overview

Basic Information
Taxon OID3300027689 Open in IMG/M
Scaffold IDGa0209551_1011171 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3112
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F007263Metagenome / Metatranscriptome354Y
F021757Metagenome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0209551_101117111F021757GGAMMTRKDYTATAEILSSYKDLIGDEFTYHDLVEDFAGMFAQDNPNFDPDRFLEACNK
Ga0209551_10111717F000447GAGGMGYIEIFRLDDEGAGWVDLSEATPDELLNLEIGLFQEGAL
Ga0209551_10111718F007263AGGMLNIIDKTDFYEIADEMIFCCDESQFKYYCIEHLEFMGCYFCEFDYSKDCEEQH

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