NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209551_1018303

Scaffold Ga0209551_1018303


Overview

Basic Information
Taxon OID3300027689 Open in IMG/M
Scaffold IDGa0209551_1018303 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2382
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019478Metagenome229Y
F098656Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209551_10183031F098656N/AMKKQKEEGAIITANESVSIVMKSRYEHGEEWQDYISDKFEGVGIPPVFNKINDGLSDRIADYQYEGNWIEAKTFINSAEVTKILKLYSTLESMNIRMVVMCEWEPGSKKHAKNVADLRRLGVIVFEGQSECDSFIINESVILNPDKTINMAVPMCIPFDRIVPHPNNRDLNVKNIPTIKASITKNGFFTQLNVVPMGIEDKKKRNIPLEEDWYMIFEGHTRFYALKDLIEKGYNVPDIACIVVPWISSDNIDLLHKILITTNTTYQSWKLKNFITSHKGNLEQLGDVDGIYAYGKMLQAMNQAKKQGWGEANPIYMFCHTDSLAFDDMKKVKDGEYRITESEYNSQIKPILDFMKKLTSDNRKFNGTIMRDIIVDIRIMYNTNPSVKDRFHQFLPWLAMKFIGDYSIDK
Ga0209551_10183034F019478N/AVLKIINENKMVGTVYWNRRFKCLQVHETDTNYRFQFDDVQIPNKYVWVEVRKDGHYNQEHQVWEYRLNYMKCPGHVITAKWFEDYKNVIDTFGTALKNSM
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