NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209551_1032273

Scaffold Ga0209551_1032273


Overview

Basic Information
Taxon OID3300027689 Open in IMG/M
Scaffold IDGa0209551_1032273 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1760
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F021288Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0209551_10322731F021288N/AMLGYTMRDLADMSYGIHSADLLINADEHPAIHNYLVKADEFLMGLLEEGYFDHD
Ga0209551_10322733F000263AGGMNNEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLIAERDLSSALEQELLSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARDEA
Ga0209551_10322735F000441AGGAGGMKMSDEYINDQLNTAQKLLWGGSETENIAAHNIISKLIKDRVEQTDLV
Ga0209551_10322736F000852GGAMATKREYLKQQGITVGVRGRFSGAAKVALAEAEAKGIKFTAEAPVKKAK
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