NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209485_1033924

Scaffold Ga0209485_1033924


Overview

Basic Information
Taxon OID3300027691 Open in IMG/M
Scaffold IDGa0209485_1033924 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: North Logan, Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061196Metagenome132Y
F091741Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209485_10339241F061196GGAVAVADKLAAENPALIERFLRSLAKGREFARRYKEPTIAMIARHNSAPADALSVDYDTALGSMTEEGSVGDDVLREEILTRAELIKAANIPEPGKFYDYSTIKKIHADLKKSWKPKLG
Ga0209485_10339242F091741AGGAGMGKKIREFMTHRDPDEHIWVERDESAVIGTARMGQRIVPKIRPFDLLRSAPRSGNRARVTVWEGDTLRIATESLDGVEEQLTRAADHDVVLFQFSGSSQVEGECGVVELEPGEVLLVPAAISHRSTGSDDCLRLRVASRELINLGVDPEKPLTQTKFKVQSSERFTANGNGSQAKQNGRTLEHISFWDPQS
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