Basic Information | |
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Taxon OID | 3300027693 Open in IMG/M |
Scaffold ID | Ga0209704_1017198 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1804 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | near Jamestown, North Dakota | |||||||
Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008943 | Metagenome / Metatranscriptome | 325 | Y |
F014121 | Metagenome / Metatranscriptome | 265 | Y |
F030059 | Metagenome / Metatranscriptome | 186 | Y |
F071163 | Metagenome / Metatranscriptome | 122 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209704_10171981 | F014121 | GAG | MTDSAYKVWETFKAELIVEPTEDMKQALASSIRVISSIIYRDGVLANEPWLTHTAQELNEIAGDVEAL |
Ga0209704_10171983 | F008943 | GGAGG | MKFDTFDWIFLTIPIFIIVAAAVITYDDQQERTLFQQTYNKNLECRQSLKGQTMARVNEICGPVPVIGDFVK |
Ga0209704_10171987 | F030059 | GGA | MGSWVDDCLQLVSRQMNETLNKNLTLIQEVATKALEELKNSTERFGGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDLQDYMLEYLKENLPDYLRNYVYVECAW |
Ga0209704_10171988 | F071163 | GAG | MTKTQSALERVIIELDSWCDNWTPTSYNDPRISLRQIADRAR |
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