NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208696_1054938

Scaffold Ga0208696_1054938


Overview

Basic Information
Taxon OID3300027696 Open in IMG/M
Scaffold IDGa0208696_1054938 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1383
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004075Metagenome / Metatranscriptome454Y
F090474Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208696_10549381F004075GAGGMAKKAATAHQPVISIRISEELRSRLETLKEVIAQKTGQTVSTSEAAKQLLESARDDRLELANLLTEPTDSLLNIRGKAEAHMPLTQAEWALVAYYCAKGAQSFMSTEQGQLSYDSLAEILEAFLAVYAIARRRKKLSLDFLYLMTLPEDKQVAAKEPDDVDSDDLRRVVTRTIQMLRDPAQKRRRPLLAVRNLYTLLDQE
Ga0208696_10549383F090474AGGAGGMPRYQIGSLRKIMRAEGLTWVLRYYATRSDGKRVERTTAIGLVKDIGPSPADASREVDRQKLRETINQLQPFQGTPRTFGQLCQDYIENELRIDQSESARPKAFPTVETYERHLIKRIIPRWGRLAPLAVESRDGFGNYA
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