NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208696_1070995

Scaffold Ga0208696_1070995


Overview

Basic Information
Taxon OID3300027696 Open in IMG/M
Scaffold IDGa0208696_1070995 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1186
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006399Metagenome / Metatranscriptome374Y
F017965Metagenome / Metatranscriptome237Y
F055156Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0208696_10709951F017965N/ANNYLPVESACSNRIALTDMSEKIGHRDALYLFACHLEWLTKRNLAAYQELLAALDDHDRDIRSLAEALLDRTSPRPVRAERGIETW
Ga0208696_10709952F006399GAGGVKYLPRFQMEDEWQAIWSLIGRCTMATSALNSRVQSLVTEYGVFWQYWPQFEQTHGERRLVGFEVELIGSHTSDLNHIDPACPTCRHVRSVLLAIAGLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLKRANGQSFETDLLNEVKTFLYKWGIHQR
Ga0208696_10709953F055156GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTEVSYIDSVGE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.