NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209446_1000005

Scaffold Ga0209446_1000005


Overview

Basic Information
Taxon OID3300027698 Open in IMG/M
Scaffold IDGa0209446_1000005 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80782
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (69.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000207Metagenome / Metatranscriptome1597Y
F012826Metagenome / Metatranscriptome277Y
F099611Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209446_10000055F000207N/AMKMVIASILTTVLIVAMTLGAMFILVQATDYVTSRESPFQRAVAICAELVLGVVLLLGTVWLATHLAVRIFSKNEPAAAGGKLA
Ga0209446_100000554F099611N/AMAQRENSYMRSLVTILLGAALVFGIYHFYFKKMPTTDEGTAPTQAISLTGVRADLIQIAQSEGGYIALNGHCVSMDELISSKTLALSQPERDGYSYSIECSGGDFSVTARHAPAAAGSPIRYPTLAIDQTMQVREVN
Ga0209446_10000058F012826GGAGMTVRAHWPAYESFQVLRNASVRTGVYVGIILSIVFSGWVIVANHVPSLDRFALARNLAAVVLLGLVALIPILRFWSMPGNLLASSLVAWGLFSMAYRVLCMDFRGLAERFSAVQIFMLGAVLYMLVVSLSWIWTIIRRARASHVSHPNHHPS
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