NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209446_1004650

Scaffold Ga0209446_1004650


Overview

Basic Information
Taxon OID3300027698 Open in IMG/M
Scaffold IDGa0209446_1004650 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3377
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006319Metagenome / Metatranscriptome376Y
F006724Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0209446_10046502F006319AGGMAYERLDQALRQLKTDRERAVATENQRKKAGAEAEIRFARIKSAVIGPIFNEVVARLVAEGFFGETVEEQNDASGPISLNVNLSEDEGFSRQGSLQVRFNPDKHICEFGKSTMAKTSSTTQTVFDDSNLKFDEMTEELVRDKAEQFVLDLIAGKLFR
Ga0209446_10046503F006724AGGAMGISMNSSTSGFRKWSEAHDPKIAAARALAGEAAVISAPDLDLDKGLMTPEEEPHRPWLVPGASTL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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