NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209445_1052525

Scaffold Ga0209445_1052525


Overview

Basic Information
Taxon OID3300027700 Open in IMG/M
Scaffold IDGa0209445_1052525 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - NADW_A/KNORR_S2/LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1374
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9728Long. (o)-44.9905Alt. (m)Depth (m)2502
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002715Metagenome / Metatranscriptome535Y
F006423Metagenome373Y
F031252Metagenome / Metatranscriptome183Y
F076495Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209445_10525252F002715AGGMPEEELQSVKLEVGLLKNEVEVRGRQIDTLLSKLDLTTDKLQELTVEIRTLNTRQEDYLRTNTSMSNEFKILHTRIGDLHDKLSSNNRRIEERLDHLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKE
Ga0209445_10525253F076495AGGAMNTFKQHVEAFQKITVKDKSGKSHTHGAVRIRPGDTHVAIKHYDAQPATNLSPAVKAHTNLSFGSIDKLDKAIAHAKKKFGLKKVEIQKIDKKYL
Ga0209445_10525254F006423N/AMKTFKQHLNEKTEYYLDTSQDNTEKYVANDGDYWYTGKVGVKGENMFLKFVATSGKASYFERAKLKKTTPEKLEKDAGMTVDFKKLYKR
Ga0209445_10525255F031252GAGMKTFKSYLTEFAQQSTSDYVFDTHSVNSSSLKIPISTSM
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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