Scaffold Ga0209445_1160015

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209445_1160015

Scaffold Ga0209445_1160015

Overview

Basic Information
Taxon OID	3300027700 Open in IMG/M
Scaffold ID	Ga0209445_1160015 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - NADW_A/KNORR_S2/LV (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	640
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-37.9728	Long. (^o)	-44.9905	Alt. (m)		Depth (m)	2502
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029469	Metagenome / Metatranscriptome	188	Y
F043443	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209445_11600151	F043443	AGG	LNEKLLELKRKKLQRQILYLRTELEETTFIFQDCLIEFEDEFRDYFKNQSNTDYKKVTTDPPEFDIPREDVNIVFKKIAQKTHPDKLINKDISDKEYDAKVDMYKEALGSVENKDWSRVIEIAMELGIDVSDVKTDDSDYLNESVKG
Ga0209445_11600152	F029469	N/A	RRLKEMEVEFRKTPRQPDDKIYGELDDKIELMELPFPPEMFDRLSSDEKETLYIWLNRRNMPQA

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