NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209447_10060364

Scaffold Ga0209447_10060364


Overview

Basic Information
Taxon OID3300027701 Open in IMG/M
Scaffold IDGa0209447_10060364 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1043
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014927Metagenome / Metatranscriptome259Y
F056131Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209447_100603641F056131GGAGGMQRKVRSTLFMTAASGLLIATAGLSGCSMFAPADVPVDCDVVKTQVAAGQTDTQIAANLNSTVDKVA
Ga0209447_100603643F014927N/ASAGANKLCILAGLTAGLAYSTFASFVANGLTPVTGRLVGADSLRGAVSGHYQEVFSLAGAVPILIASLIVFTLVWWSMRVILEHRQREAWGRGSDIDRSPLLIPVTMLPLVSVTSK

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