Basic Information | |
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Taxon OID | 3300027706 Open in IMG/M |
Scaffold ID | Ga0209581_1000887 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 43297 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (78.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F053166 | Metagenome | 141 | Y |
F071061 | Metagenome / Metatranscriptome | 122 | Y |
F091404 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209581_100088721 | F053166 | AGGAG | VSFIKKPPQTITRQFQLEEPLAQTLDSYARFIGSTPDHVVASALRFVFWKDKEFDRLQKEQKKARKAGQPAEVKRP |
Ga0209581_100088724 | F091404 | AGGA | MSSPDDKRPWMSSNRGLFRHCPDRYPMDVFSYTREATHCFDQRRFLACIAMASTAVEIILNRDRRLRRLPNFKSPDGWAYLNNRTLRIARDNGLPSNALLSQGDDLDSQKPIAFVEIRNKIAHGEIAHLVSDLSDYDPSAEQIATEQETKMRKFVSEWFNTAPDVQEGHIRKNQWPQD |
Ga0209581_10008875 | F071061 | GGAGG | VRDDLRCACHICDVEDHLFDVLAEPPGNSRFLALAASSPVLAKFTNISELLAYLHSPRTGDYDWSDAGLTLSALVAARATTCDSELIHSVLVLALAPTIHRTHTEVCAWFRELEPEDIGQQILAFFLELVASAATENLAGILPIALSRSLRKASFRWAEKEQHALLKRQDETQIETNGSEPAAAPAFEHVSVLNDFLDYCTRQGLLSRFERDILIRFKVDGFTHKEIQHRHTVLTDQAVRLRVHRIMQRLQDAALSLGTRTEGANYGCRSITPLPVKKSEDGMKHFSLKHSTNVLPISKSRGQLSLDTSQASGEGQ |
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