NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1001447

Scaffold Ga0209581_1001447


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1001447 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27512
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F000885Metagenome / Metatranscriptome849Y
F002750Metagenome / Metatranscriptome533Y
F004677Metagenome / Metatranscriptome428Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_100144710F000188GGGGGMSVKPELAFDVCWEVYRGAREVLERKRGVCALNWQDTSKFLWRPDIRPKLNEWVADFALAGQAALDGPEHASRMVMFRLFYLGLAPYERARHFLGLSEMSWVKWSEEIRRRCGKELLRRGMFPPRRYFRNAG
Ga0209581_100144719F000885GGAMGTNAHLQFIGEITQICGVIAAVAGVVLSLHHWPTALALIGGGVAFYAGKKLRGSAL
Ga0209581_100144721F002750N/AMWNWLRRFVQTRYVGLLEGEVQRLRAENRALMNSLLGTAGFPPVEFPEAPAQQTLPRLRKRSWHQIQAWREADAAREAASVTESQNH
Ga0209581_100144725F000512GAGMTARRGTIHRAPTNASSRIVVLREKYETPESVARRLELAGGHNRFGEPNYRAVWGWNRLAWIGGKFEDRDETGALLRERVELRFEPKYPAVNRWHIERWVPPEAFGSPRQWYAQTAELADGRSIPALGPYPSRGEYEHCFTLETPHGEFVQLTPTVAEYIARAIERSRSLPRVARRDSLYDRAQRDELAYENWAYDLLDDAVPAFHKQPFVCVT
Ga0209581_100144726F000739N/AMNLLKLEIWLRGALAAAISGAAGGVLTGFAAVGIDPHHFNFQTGMGATFRIAAAAALINAVIGVAAYLQKSPLPSGD
Ga0209581_10014478F004677AGGAGGVPSHKTQPPWEFLLSASRNSLQSYELSRLSHAANLRKEISALLDQWMEENSAAMLARWLMEHRERELTLPEALSASGEPQQQAHSVSDNFFANRASSSRPGRGDA
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