NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1001722

Scaffold Ga0209581_1001722


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1001722 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23923
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004293Metagenome / Metatranscriptome445Y
F022505Metagenome / Metatranscriptome214Y
F029879Metagenome / Metatranscriptome187Y
F057229Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0209581_10017222F022505AGGAGLKNKMATLLVIVSAMLIGAGMTWQQRLLFVGGIVFGLVVEALPELVDRLKETLTDKWRLSQVVKRSKAA
Ga0209581_100172221F004293GGAGMERVKNAALVFCLFIVLLVIFSSYFRANEVGTFSGALAGTPLLVHIFNRVVPRRREPACERPMTALVAHSESMPRPAEQIVVLRMEGPNGRA
Ga0209581_10017225F029879GGAMLTESELRQGLRRRSPIFPDVTVDQPVTLQEVDAAFRAGRRSRADIGITNHVLNLFLEPRNPFEPQRMRKPKMEAVVFGTLLALVVFAVLGFNIAAPRP
Ga0209581_10017226F057229GAGGMFGLVFTTLMLIVLEGCFVCWLHHMPLPDRPFVSSGFLAVPPWYQKPRFEITLLLMIAAGMLFSVCRGLWRICREREQTSSAEIIRSLRRRVNTAASVAALAGVNLALASWLR
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