NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1030222

Scaffold Ga0209581_1030222


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1030222 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2479
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F015771Metagenome / Metatranscriptome252Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_10302221F015771N/AAANGWFDIAITDPSAARPGLFYFAESDTSPAFHSPRVYFMGASRNLYLQLGNQTLYWRAYSQYIGSLPSAPVTFGSPPVPVTGGGASGPAPLPSSGSGVFVNGVPRGGNGFGTNPGSRIIRQSLL
Ga0209581_10302222F000703N/AMQIREYKSEDLAALRAIHAAQGFDYALPDPGNPLFVTKLVLADDARQTLGAALLRLTAEAYLLLDPRAGTPRQRWQSLLALHEAARRDASVRGLEDVHAWLPPQIARTFGRRLERLGWIRDDAWTPYCKKLCA
Ga0209581_10302223F099605AGGAGGMPSTTNSAFWDFNPSDPVTLTASFIFDTEDTQESAPVATALAAIQARIAAASITATQPDGATVAISVRI
Ga0209581_10302225F000624GAGMPLHWYGFVAAVASGLVQFSLFLRWLHRRMRDDEIVHAFVRDLAVTHLPHIYSALRQIADQKGISVAEAPLVHFVDFSGHRRRR
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