NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209443_1044005

Scaffold Ga0209443_1044005


Overview

Basic Information
Taxon OID3300027707 Open in IMG/M
Scaffold IDGa0209443_1044005 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1847
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F007751Metagenome / Metatranscriptome345Y
F010836Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0209443_10440052F002303N/AMDIRQECRERAIEFAKEWNCENVSDHILDIMVSIMCTRDKSSYAGGGFVEAVIANNLYLALSRADTDCRNNIFLLTMCKANCFI
Ga0209443_10440055F007751N/AMVKQFITNFKIKNMNQILELKSVIGKDISQNQSPTCRARLVSVGKANCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY
Ga0209443_10440056F010836N/AMSTSNFHNVNASAIFAVPLENDFDYEDLVDNLKSELKDNSDYVDYGKTDHNELRSFPSRTLGSIRRYHQYKDFYVEVCVTPVIRSGYYSGCNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLSKSAATKYAKLAEKKADKIKNEIVGELEALYNDYSDRYGVTAVFSNGETIYHKL
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