Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1000057 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1000057 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	129563
Total Scaffold Genes	181 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	110 (60.77%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

129563

Total Scaffold Genes

181 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

110 (60.77%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F019784	Metagenome	227	Y
F024484	Metagenome / Metatranscriptome	205	Y
F029568	Metagenome / Metatranscriptome	188	Y
F043882	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000057102	F024484	N/A	MLIPTNYTVDITLFQEACHRLPKGAMKTTINNPTGDFFYDPWVIKDEYKGTVWETLYNSLPEVKGEARIIILDPGQCYQVHADIDDRYHLNVLGDNSYLIDLVRETMHPLVQDGIWYDMDASFLHTATNFGRRARVQLVVRKLLKKNKLTNPVAVSVVTSIDNPNYARFLFDNTMSPWFNEANKLGFINSFVQGEVTIKFNIEQDRLQSLKRILPSEFIITSNN
Ga0209188_1000057107	F004256	N/A	MNYNYYYNNVPGETPSRNNLIYTSLISEDNKIFVQWYYNDTEYHKGQNEVVDPKLMNDKFHRELHFLQNMAWHNPDMVPKIIEVNIPEKKIYLEIDGEDFWNLAKCSIENYDVVLPDWQEQMLAILQAHKDRGWYKYSLHPSSYFVVDGKLKSINYFFTYSSNEGPISIADHSSHIYSARQAIMRKQVEAMGLDWDEPQSLDKLQQLCFESFRSNYPDDFIEQAKRIYD
Ga0209188_1000057111	F029568	N/A	MYRYDLTNTEIKIYYETCPEFESVRELCLQEDNWLRNNYTKESLVLEQHTGYGVVYQKSTGNPMLMAGVFHDVRYPSNVAKMVNRLYTFPDFRTNRSNMVDGFRVADKLIKELIQINCFNIYLVTMQNRPHRGGKRWWDIWCNAMNTASNNMWTVGTGYIQTCPWPVQKCWQNFVYHELLPGKFAEWNPVVINDEEWANMPEGV
Ga0209188_1000057113	F043882	N/A	MGTFYIARPEISYIHVPRTGMAMKKIISDWLKTNFIVIDNEDWMIDHPNLQMVRELIPTGKTMSVVRNPWQRVYSLYRKVSTEGYWLDWNGKTLLDLKPINEWVIDYCNPDLPFEFPRWFNKSTNQVDFLNYNGNWVDFIIKAEEIATEFKPVQEYLECKRPLPDLSGYDHWEFKKYFNDASIKSISKVHERDIDFFKYSIS
Ga0209188_100005784	F019784	N/A	MINLNVFELDKIKKICEEVGTEYFTLGQTDESGIGSILTLTYDTEIAGYPAKISVEVRGVESW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1000057

Overview

Ecosystem & Geography

Associated Families

Sequences