NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000072

Scaffold Ga0209188_1000072


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119428
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (70.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031870Metagenome / Metatranscriptome181Y
F057378Metagenome / Metatranscriptome136Y
F070099Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10000722F070099GAGMENVKSFCEQHQIRVLDTNKRAHRYRRINMSYFRDPTDFIVNDTEPLYTVEIAESELEKIADFESEVFNNMRKQGHYRMFETLMEQKEREKYLRDKYPAVNNAYKQYSLMLKLAESGEL
Ga0209188_10000725F031870AGGMIDYTDYMILPCGGVAYYDEPNHGMNYFCAQCDRRVCDMSEACKREEDKWYLIEMLGGKGWDYFAEPDEF
Ga0209188_100007298F057378AGGMINSKITKTAAQTSNEERLFKLLEGIDWKLWEIYNMMKDNLPEKPKTVKKTTAKKSEE
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