NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000093

Scaffold Ga0209188_1000093


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000093 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102377
Total Scaffold Genes169 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)95 (56.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003826Metagenome / Metatranscriptome466Y
F020169Metagenome225Y
F044497Metagenome / Metatranscriptome154Y
F061857Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_1000093150F044497N/AMYEWILVLALAKEPDIKKWPEWECVRWAWSGDVYNRTVWCLEWRKRENRWISQPSLLWLAPQSSLAVTL
Ga0209188_1000093151F003826GGAGMDPITIGLAFTAAQSAVGYIKQAIALGKDVNSLVGQFSKFFDSADAIHKERSKTKIKAQQLGKTDAELGKEALQIAMHSDALRQYERDLKDMIVWQLGKPQIWEDMIRERTRLVKERAAAEREEAERQLARKKKMAEMGMLCMYFLSGSAIIFAIVMGGIGIHGSMEEKRIYEQKVAERDAVVRRHARERAAKEREERDKAVAGG
Ga0209188_1000093160F020169GGAGGMSSTVRIPWNIGDTIADWNEACGWAIEYFGLPGARYVCRIGDIYMDFVFKSNKDALVMAIMWNAQIVPDNELTVEHVGKLLQ
Ga0209188_100009355F061857N/AMEVVRYGETCTVKQANSSKTVEAAVHEFKEQKNLTVVLNKSVKLPMTWNGKMYEGRMAGIDFTSTGPSISKTTTGRG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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