NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000106

Scaffold Ga0209188_1000106


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000106 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96036
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)118 (80.82%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Associated Families14

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F006979Metagenome / Metatranscriptome360Y
F008023Metagenome / Metatranscriptome340Y
F008806Metagenome327Y
F009327Metagenome / Metatranscriptome319Y
F009741Metagenome / Metatranscriptome313Y
F010448Metagenome / Metatranscriptome303Y
F012098Metagenome / Metatranscriptome283Y
F014843Metagenome / Metatranscriptome259Y
F016389Metagenome / Metatranscriptome247Y
F019092Metagenome / Metatranscriptome231Y
F030064Metagenome186Y
F055682Metagenome / Metatranscriptome138Y
F084140Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_1000106113F009741N/AMTQSFDGNYDYTKPWRAPVQPDQVAKRWQYNGPWSTNMERLTSQALMVMSIPGKDIQDMVRPPLPQIRLFPDRFGYGPRTQPGIGEVVTIDRQYHEPRISWFSGGPAGFGGTSRNDLGGV
Ga0209188_1000106116F005167AGGAMAVNSSRSMNSSLNEGSTDGKYRKARPDTEVIPGLGDEATLDNRQSLHPFYGFGFLTSEYPNKVNPGK
Ga0209188_1000106120F019092AGGAGMSNIPVLGEKKMDNEPMFRLLYCLVCQTLEELPPYDGIPEQDHLLAIACEQHVFPSGEPHKGKLFVVPLRAWAKSESKKEIIRQIKSGGSKGLAEIDDTFYESRSTFLEGAMECYKRHKKPKDGCDDWHAKDRLLVPNTIKERKSEGMARYQDEAGPKTYLCDFCPVAIGVAQRKRKLLGIEP
Ga0209188_1000106123F014843N/AMTSRHTEDAKHWLQSHGIINYDDLIDSSFALEGEDLKKRQFTLSRSRAPIEMYVDSDPTMCAWVFEEQHIPAVLFSHPGFAAVENRPDAPKKVRRWSDIEASITRVNISRSENAQKPKEAELWSD
Ga0209188_100010628F030064AGGAGMLFTTLGIVTGALIGLGALLNPIRKRLQRFMRWMDQFMRDWEGEESAPGRDRVPGVMERLNKLDGELSNNGGKSTKDVVDKLFYNQSQVIETQEKMFEAFVEMGERLLAIENCLTNNKISADK
Ga0209188_100010631F016389AGAAGMPLIRKFAVQGHAVPATAHSPRGPFPPEILEQPRMQDSDYQSDSLHAGLDDVRFFKCKDCDEIMLEAELDTHECDDE
Ga0209188_100010634F012098N/AMPKVHNIGPKYFIQLLDLPVIWGNKIMVRGWTQEIEEPFRTANPFLVRLPKYKAVAFGKWNGFKTEEEALKSALNTREVTYDDFTEEAGWTSPNSDRETSSEDSYSRLDSLDGTLNVHDWQTHYRMAKESEQ
Ga0209188_100010635F084140GGAMYTIGKLITEWQKSPNSDALLDEVLLGAEAFYAIAKELKKRA
Ga0209188_100010642F008023AGGAGVANTPTSPLDATGRAAEQAAKKNAKAIKDRKDEISIAAQVEAESLENNIFDPKKPDTPLVLDEIENVGVTTANDTVIIRTITDIEEMTYGVGNHYTFKAGVKYRVSRGLANYLEQLGYIWRPN
Ga0209188_100010656F009327AGGAGMRGSKVQGRFKIDFENKSMEEGVVDELRDPVGTEVDWWVFDQNYLETHPTDVYDDTYDTSNQEAGKGRRWNTPIKLPVIMAQQLRGTNIMNERGFYVVDTLRLVVSVADVNRVLPVMLTDPNTHIKDRAVFQGEVFVPTRVLPRGRYSNFYSVITIDMNLVNSEELVNDTQFQTYAN
Ga0209188_100010660F006979AGGCGGMSKTFKADGEKHTVKKNKNGDVIVDHAGNKGKWDKINLTKKAGAKNIQQGVKAVKKYHRTTGK
Ga0209188_100010666F008806N/AMSFLLEEDKAIRDLLKGMVVTDQKSVTEAGPQRNVDVWFGQPDQEIRAQSYPYITIDMIDVSEDFQRSMRGLVKPPYLQDPTNMVDGVQATQSVQGVDEVPYDGTVHNWYIHYPIPVNIDYQITTYSRQPRHDREILAQIMYTKIPLRFAVLEVGNNDAQGTLRRLDVLDISKRDVTEQGKRLFVNAFTVRVSSEIAPETYTQVYKALQVYATGPTDSGSQVIGRGTFTPISFTISS
Ga0209188_100010688F055682GAGGMYDVNGLSPLKKHWLLRTSNIPRRFIGLEPNDIIERVGSFPHEVSSWIDDVASGQVIKSIGNIGINGVGLVFDGGPGLGKTTHAVVAAMEIVRNMPEDEVLAANLMGLNHKEFGLKFRPVYYMTYPEFLSQKKSAFDMDGEDKREMSYELDGFHGRCRFDWLNVRVLILDDLGKEYGSKYDDTSFDEILRLRYDKGLPTIVTTNVRLENWEAQYGEAMASFANEAFLRVPIIGSDLRGAQ
Ga0209188_100010690F010448AGAAGMKNGDISNVSSPQVIVTATLLLTLNLEEEKRLLSKKKLVKVGEIDLLAANKLWIMTNNYGVSLELAGFEDEGWTEELLDKAFEKLERRAVNPFNYWQLYESPHEIVGLLPYRANLKAVIDVPGRVAMYGSAGVQLDNI
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