Basic Information | |
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Taxon OID | 3300027708 Open in IMG/M |
Scaffold ID | Ga0209188_1000211 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 64517 |
Total Scaffold Genes | 84 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 78 (92.86%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001817 | Metagenome / Metatranscriptome | 630 | Y |
F024742 | Metagenome / Metatranscriptome | 204 | Y |
F028742 | Metagenome | 190 | Y |
F053243 | Metagenome / Metatranscriptome | 141 | Y |
F087179 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209188_100021110 | F087179 | GGAG | MRYEQSKPLVEELMNIAVLYHASPSLLRQKVAEAIDKHIPELDPACMERGCSCIDTFKEKNT |
Ga0209188_100021114 | F024742 | GGA | MNNETQRIMEALMLIYGSDLQAATITVLLKDGDTAVRFITQTLPQKETGKHD |
Ga0209188_100021126 | F028742 | GGGGG | MSNKLIKLTEKTSAGLCDALFEEFDLLRNGLSDSHRASAVAKLAVQIINTKKLEIEAATFHKAGLRFTPLALTASGIPIGKKEKHA |
Ga0209188_100021154 | F001817 | AGGAG | MAMQTDVKSAHLSAAGSYYVGRTRLKGIVISPKISTAVTFEIRDGSATAAVLYTMDLASNSNPNTFYILVPGEGILANTGLYLTTSTGTVTGITVFYG |
Ga0209188_100021161 | F053243 | AGGAG | MDKKEVKAIADKEVSAHENRLHPGAKKFAKGGKTNLQMKQLGRGMAKVANQMKSSRGK |
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