NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000211

Scaffold Ga0209188_1000211


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000211 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64517
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (92.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001817Metagenome / Metatranscriptome630Y
F024742Metagenome / Metatranscriptome204Y
F028742Metagenome190Y
F053243Metagenome / Metatranscriptome141Y
F087179Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100021110F087179GGAGMRYEQSKPLVEELMNIAVLYHASPSLLRQKVAEAIDKHIPELDPACMERGCSCIDTFKEKNT
Ga0209188_100021114F024742GGAMNNETQRIMEALMLIYGSDLQAATITVLLKDGDTAVRFITQTLPQKETGKHD
Ga0209188_100021126F028742GGGGGMSNKLIKLTEKTSAGLCDALFEEFDLLRNGLSDSHRASAVAKLAVQIINTKKLEIEAATFHKAGLRFTPLALTASGIPIGKKEKHA
Ga0209188_100021154F001817AGGAGMAMQTDVKSAHLSAAGSYYVGRTRLKGIVISPKISTAVTFEIRDGSATAAVLYTMDLASNSNPNTFYILVPGEGILANTGLYLTTSTGTVTGITVFYG
Ga0209188_100021161F053243AGGAGMDKKEVKAIADKEVSAHENRLHPGAKKFAKGGKTNLQMKQLGRGMAKVANQMKSSRGK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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