NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000278

Scaffold Ga0209188_1000278


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000278 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54983
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (62.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F007524Metagenome / Metatranscriptome349Y
F007580Metagenome / Metatranscriptome348Y
F018539Metagenome234Y
F022196Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100027812F007580AGGAMKFLGSIVRSIDFVYMFFKNHLGHLSAHTLGWITIVLLHFAAVPTLLAMILAQSDKLPPYDLMLFVWAALTTLFFKSLIEKNFLYVSTICMGFIGQVVMLGMIVFK
Ga0209188_100027838F007524AGGAMARVTKTHAVAINKLMLPLVNTVAFYDENETDFIMFKMCADDIAHNVAALQVFNSTLDAAVLHESIMRQDTCPREHFYTVLKYIEDNRLIPANMFTCS
Ga0209188_100027839F018539AGGAMSNIKTANIAKAKVIYYKDKETYKIIFAFNVHIKEKDNGDIVHVFPTQAKCAYVSGDIAYETLQQDKLRIIAQAKQVMRTDYVEFV
Ga0209188_100027851F000652AGGAGMKAYVTTIIRQELEVPDSWEREDVLDFLSEVQSFRTAFQGVSNEDQTARIVDLGVVEEEITELGEESFDA
Ga0209188_100027871F022196AGGAMTTLAKPIASSTGGVITYTKTGLIHTAGKAYSGKIAAQEAKAGK
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