Basic Information | |
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Taxon OID | 3300027708 Open in IMG/M |
Scaffold ID | Ga0209188_1000278 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 54983 |
Total Scaffold Genes | 93 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (62.37%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000652 | Metagenome / Metatranscriptome | 959 | Y |
F007524 | Metagenome / Metatranscriptome | 349 | Y |
F007580 | Metagenome / Metatranscriptome | 348 | Y |
F018539 | Metagenome | 234 | Y |
F022196 | Metagenome / Metatranscriptome | 215 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209188_100027812 | F007580 | AGGA | MKFLGSIVRSIDFVYMFFKNHLGHLSAHTLGWITIVLLHFAAVPTLLAMILAQSDKLPPYDLMLFVWAALTTLFFKSLIEKNFLYVSTICMGFIGQVVMLGMIVFK |
Ga0209188_100027838 | F007524 | AGGA | MARVTKTHAVAINKLMLPLVNTVAFYDENETDFIMFKMCADDIAHNVAALQVFNSTLDAAVLHESIMRQDTCPREHFYTVLKYIEDNRLIPANMFTCS |
Ga0209188_100027839 | F018539 | AGGA | MSNIKTANIAKAKVIYYKDKETYKIIFAFNVHIKEKDNGDIVHVFPTQAKCAYVSGDIAYETLQQDKLRIIAQAKQVMRTDYVEFV |
Ga0209188_100027851 | F000652 | AGGAG | MKAYVTTIIRQELEVPDSWEREDVLDFLSEVQSFRTAFQGVSNEDQTARIVDLGVVEEEITELGEESFDA |
Ga0209188_100027871 | F022196 | AGGA | MTTLAKPIASSTGGVITYTKTGLIHTAGKAYSGKIAAQEAKAGK |
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