NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000446

Scaffold Ga0209188_1000446


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000446 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40025
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (88.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002722Metagenome534Y
F026194Metagenome198Y
F064523Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10004463F002722GAGMAGRTGVRATLYNWLSTGSITGLNQIFTSFPKRIDYQVNSTAGQLSRAAAVIFIQNEKETRLAIGGATNGWKRVDYSIIIQVYHHSLERNAEAAMTSFDTLIDAIKTRLRSDHNFGDSTGTLVWQGAEPVINATYGEPATNNGGATETFAEIQFDVTEMIQA
Ga0209188_100044650F026194GGAMGYINQPFALKPFFDDLAARVRKLETAQRFTVPIVTTDPTNPRNGDMWYNSTSSQLKFKDSAGTIRIVTLT
Ga0209188_100044660F064523N/AMADRFGWTPEQVDNLPAATADWLLALAGAVQEVKNEKAEKAGG
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