Basic Information | |
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Taxon OID | 3300027708 Open in IMG/M |
Scaffold ID | Ga0209188_1000451 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 39819 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (91.67%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003065 | Metagenome | 509 | Y |
F012327 | Metagenome / Metatranscriptome | 281 | Y |
F037689 | Metagenome | 167 | Y |
F048932 | Metagenome | 147 | Y |
F066436 | Metagenome | 126 | N |
F089837 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209188_100045126 | F003065 | AGGAG | MTEPELNIWERALGWRKRQMIQRQLDPISNKIRNDALEEVAKEFDKMVGDTPASFAVYVRSMKKVNND |
Ga0209188_100045136 | F048932 | AGGA | MDYPNRGTLWANGYKTTDAQPDMKGDIKLELDLVKDLLENAESDHIVIKLSAWLGKDKEGKRRVSLQYDSYKKDAPVASSAKDPWDD |
Ga0209188_100045137 | F037689 | AGGA | MIKDEKRSHSEWVKICSQLNDALKSSIKDEDNLRVVIDNLEEKVGKLEEQLTMSIGVIKYLELQIARSNTVRSNKDRA |
Ga0209188_100045141 | F066436 | GAGG | MDEHQANLKDLASMLILAALIISERDGENLAEEAHEIADQWLEARNNEPAEGLAAIKKRKRNGRKSEELG |
Ga0209188_10004515 | F012327 | GAGG | MVEKYLKHLIQKVDDKVSQLQISMADGKAEDYAEYKKMCGEVKGLLTARLFITDLQERVTNDDDE |
Ga0209188_10004519 | F089837 | GGGGG | MSCCSCCAQSVIGLHCLGVFDIFGAFLFHTHENTMPQKLTRAQIKAGLDQVPIETLLSSGEGKTPRLTSKQKAFAHAVALGETKASAYRQSYNPKPAKSTIVTAPYKLAADARIKREIEAYKLAIEAEKHRTPAQLKALLVQQLVEHSLNDDFPPAQRMKALQLIGNLFEVGAFLERKESVVVHKSSDIRTRLLERLGRVTDVTAKDNGSTLMEEIKGAGSAESADGTPTGGAPPQEGTGAHGAHTHTISLIQSSSKKGGVPPSEIVDVVSDFDKE |
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