NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000531

Scaffold Ga0209188_1000531


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000531 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36384
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (61.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F007524Metagenome / Metatranscriptome349Y
F014848Metagenome / Metatranscriptome259Y
F022196Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100053116F014848AGGAGGMTRYYDTIVAFERDGFDIIVDKTYEDMHPRDSFDDSCHDVDEICKDIDNGQLEWFMLRVRVLVEGLELGSAYLGGCLYEDPKEILTDGTAEDFIAEAMTEAKSKVYSMYKRFQELSFNIDAEGINA
Ga0209188_100053120F000652N/AVTTIIRQELEVPDSWEREDVLDFLSEVQSFRTAFQGVSNEDQTARIIDLGVVEEEITELGEESFDA
Ga0209188_100053137F022196AGGAMTTVPKPIPSSTGGVITYTPTGLIHSAGKAYSGKIAQQEAKGK
Ga0209188_10005314F007524AGGAMSKQMTQHAVAINKLMIPLVNTVAFYDENETDFIMFKMCADDITHNAAALQVFNNTLNAAQLHDNIMRQDTLPREHFYTVLKYIEDNKLIPARQYACS
Ga0209188_10005316F007524N/AMRKVTRAHAVAINKLMLPLINTVCGYFDPTDNDIDLFKMYADDIAHNVAALCVFNSTLDASVLHNNIMLQDTSPREHFYTVLKYIEDNALINANAFCCS
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