NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000647

Scaffold Ga0209188_1000647


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000647 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32494
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (69.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006255Metagenome377Y
F007848Metagenome343Y
F016143Metagenome249Y
F017107Metagenome242Y
F041636Metagenome159Y
F046243Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100064728F041636AGGMANLTEKEIEDIVEKVTQRVIENVYTSVGKSVVTKLFWFVGVAAVGVVTYLAGVGHIKVG
Ga0209188_100064732F016143GGAMDNEYIYTPVGTDITMRWRLNGWIPPSELPEYLDKWKHFQELPLRKLDDQARKEYELVMKKAKVMRIR
Ga0209188_10006474F046243N/AMLRPHVESALEKAQKKRQSKQPPTELDESGGVLNKQANERMKRKRAIHNAMNKIHDPDIA
Ga0209188_100064742F006255GGAMGELNQLMLEHEEFLESALDDMEYGGELTQEQVDCIRQACGKPKRNVVLKELFNDFGNIFGGAK
Ga0209188_100064744F007848GGAMKDFLGACLLGAVLGGLFAYGIPAKAQTYPMTDSRGYNVGTVQINGNTAQFVNPMGYTTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPSSPSTPSSPRVLQ
Ga0209188_100064748F017107N/AMNDYSENYLRIQKLLKCYHNATLKNQYEKATKIAHDLADETIKLEFATYEQIRKQWLN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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