NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209188_1000672

Scaffold Ga0209188_1000672


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000672 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31802
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (72.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007848Metagenome343Y
F021938Metagenome / Metatranscriptome216Y
F042791Metagenome157Y
F053781Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10006722F007848AGGAMKDFIGSCLLGALLGAMFAYGVPAKAQTYPVTSPMGYNMGTVQINGNTAQFVNSAGVTTQTATIYPNQVIITSPSGYTQSVVGNAGYTVPPSPPTSSSPRVLQ
Ga0209188_100067228F021938AGGAGMVCPNCGYSESNHVKAKQSDEEFFIEWWTPTIGEEAAKASWQDKVAMKSRAAPMVMSDIEGHISMADGTWVSSRSKHRENLKRNGCVELGNDVPTQQKQHEFSRKDQEARKRQIAEIAYSKLNYK
Ga0209188_100067230F042791N/AMFATAFQANAFQNNAFQVSGIPPVPTGVIGGDGWTREEWLRAQRLDKKIAARQRLLEKTLKDDNAARKQGIRDLVSPVAKVKQSKVQLKQEVKADIPLAETEDLQRSISYLERQRDNILAAVAYRKQQTLIQEQLIYMEAKRLEELDDEESILILLH
Ga0209188_100067246F053781AGGAMTTLKVTEEFLILRLLCKMYDDALKGARPTQMLELSVDIAESAEKLEQLTVDYINGH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.