NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000758

Scaffold Ga0209188_1000758


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000758 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29453
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006255Metagenome377Y
F007848Metagenome343Y
F014955Metagenome258Y
F016143Metagenome249Y
F017287Metagenome241Y
F086796Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100075826F016143GGAMNNDYIYTPVGTDITVRWKLTGWIPPSELLEYQDKWKYYQELPLRKLDDNAKKEYELVMKKAKVMRIR
Ga0209188_100075829F017287N/AMTLNLDNIFAEKSPCDRCDQFDECKDSELACRAFSFYVLNGFFYEETPKYPTNNLFNKIFKEDDNALKNYLKSVRAKEQMGIVDLFEKE
Ga0209188_100075836F006255GGAMGELNQLMLEHEEFLESALDDMEYGGELTQEQVDCIRQACGKPKHNVVLKSLFDDFGTIFGGNHA
Ga0209188_100075838F007848GGAMKDFLGACLLGAVLGTLFAYGIPAKAQTIPMTDARGNNVGTVQINGKTAQFVNPMGVTTQTATFYPGQIVIATPQGVTTAVVGNTGYLVPPSPPTVPSVRVMQ
Ga0209188_100075842F014955N/ALASWQQRGMGMLERYIVAATGLGYLVVGLAQYFKGSNSNALIWIGYAAAQVGLWMNLK
Ga0209188_100075844F086796N/AMNDYSENYLKIQKLMKQYYSATTKCKYDLATKIAHDLADETIRLEIASVRALKEQWLKN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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