NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1001537

Scaffold Ga0209188_1001537


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1001537 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18290
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F008750Metagenome / Metatranscriptome328Y
F087188Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100153716F087188GGAGMTNLFNADCYFKTEYYNPRIRATVPPAWVIEFNSALPNTNTPPVFFGHSRREAIQNAIDTLRSMGLTGRLILN
Ga0209188_100153724F000952AGGAGMATSDQEQKGINVRQHKRMAMGEKLDGTSMQPKGQSQGSKSSGGGLSHVKAKRK
Ga0209188_10015374F008750GGGGGMMRRMGIRELLKEPFKKPTPLEMIAAELFEAHISKLEAETAVEYAQSIVDYNVNRIERLNKRMEEYK
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