NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1001884

Scaffold Ga0209188_1001884


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1001884 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16111
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (70.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004517Metagenome / Metatranscriptome434Y
F007848Metagenome343Y
F011648Metagenome / Metatranscriptome288Y
F053781Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100188414F053781AGGAMTLKVAEEFLILKLLCKMYEESLRGANPTQMLELSVDIAESAEKLEQLTVDYINGH
Ga0209188_100188423F011648AGGAGMSEQEQDFNSFQEHLERIFKDLEDGVFLSADEIGDLRYACGLPSPIRNASVPPVLRDVINDFSNCFGNPLNNFPSIWTKK
Ga0209188_100188427F007848AGGAGMKDFIGSCLLGALLGCMFAYGVPAKAQTYPVTNAMGYNMGSVQIQGNTAQFVNPMGYTTQTATIYPNQVIIQTPNGITTSVIGNTSYSIPPSPPTVPTVRVLQ
Ga0209188_10018847F004517AGGAMKHMDRKYPKENAMLREHKQSTFEKNQADRLARRKMIANKLKDLDKEVK
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