NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209188_1002099

Scaffold Ga0209188_1002099


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1002099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15090
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003826Metagenome / Metatranscriptome466Y
F006141Metagenome / Metatranscriptome380Y
F021767Metagenome / Metatranscriptome217N
F041019Metagenome / Metatranscriptome160Y
F044497Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100209912F044497AGGAMYDWILVLALAQEPVKKWPEWECVRWAWTGDVYNRTVWCLEWRKRDNRWIP
Ga0209188_100209913F003826GGGGGVDPITLGLAFAAAQSAVSHIKQAIALGKDIHGLVGQFNKFFESADTIHREKTKQKAKALYLGKTDAELGAQALQLAMHSDALRQAERDLKDMLYWQVGKPEIWEHMIVERNRLFKERAKAERDEEERQLAHKKKMAEQMMNTLYFIGFAVFLFCASMVGVGIYGAMEEKRIYEQKVEQRNSVLRRQAMERAATQQKEREDYAKGSN
Ga0209188_10020994F006141AGGAMGILEVVVYGFFTAFGWWGANHYVIEPYLPPPMERKVEEKKDDKK
Ga0209188_10020998F041019AGAAGMIDGVNSAATTLKAAQTAGKELGAVVTSQQADMEATIQREHKARITAKLAEDDRKSSLELRALAKFESKMRYEQEIAKLKADTIRKYGKDAWAKVEAEKAQMEKERQTELTAMEHDRNKQIDLLCWCVTAGALVTYFLKLYKI
Ga0209188_10020999F021767AGGAGMEMEQIKDKISAGEAKGALIEKVTFAVLPIMFACVVYLMNALSAVHTQLTILEGKMQLVVTSDNKQAPNMGAELAREKLRQDFMQANTEALSRSGANKAVLDTLVWRVQELEKFKEKQSNNGGKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.