NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1002449

Scaffold Ga0209188_1002449


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1002449 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13681
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006141Metagenome / Metatranscriptome380Y
F019079Metagenome / Metatranscriptome231Y
F075664Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100244911F019079AGGAMKKIFAILALAIAGTAFAADSFTVEGQHINNAGAAAQQQYVLGVKKEFGSFAGDLAFSNAQTEGTNALSTRLEAGATVNGPVGLYARAAVGQKYTNTTDFTYYSIEPGIAAPIGYGLTAKFGYRFRSAFDSTQNNDQTHTARYSLAYALSKDDTIAIKYDRVNGDNNQKIVAVAYTRGF
Ga0209188_10024494F006141GGAMVLEIFVAGMITAFGWWTANHYVIEPYFPPPIEKKVEDK
Ga0209188_10024498F075664GGAGMNFRSWCREKWYEHIDELISYGLEPQFTAQEYFNKYKFWLKREYRHTQGEK

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