Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1002520 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1002520 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13435
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

13435

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F003521	Metagenome / Metatranscriptome	481	Y
F005449	Metagenome / Metatranscriptome	400	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100252010	F003521	GAGG	MKSLVLNIRNFFNRRTRVEDSKKEANVNRRTLVIENGESASRLMRNEDFALLFNLYRFYLLERLEDCRTDPERIDNAHAVAGVRDFIGFVEKTEYLGKVAIKTNT
Ga0209188_100252011	F005449	N/A	MGQQDNQMENISESLNANTIYRAQYKMTGFSTSVRIKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPYVDIEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEYIDAEEIQRGVSAMFILDRKFDANKHVFEFQPMQGNLAYVQSSMQRFEADKMSMIGMTSPSDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLIQYADDYNIQQLANVCAQGKPFMDAVSMSNYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQQAFAQSMMQLDPSVPELFAKVRRPYEDTLRVLGVKDVDAYLPTMEEAAKIMQAKAQKPPPASDLEIQSKTDLNKAKTQETMARSGLLSAQTKDIAVDDAFTAMAAKAGKLKAVEMD
Ga0209188_10025206	F000857	AGGAG	MALNMNDNDDVKVNEEYYTKGILEAGIDGVFRHNDKLFQEVKSGTWSQTFNTPNIDYKVGAINGQRYVQYDQKNVESIRERCKEMRAFYKEHGTDNPFFAGTAHMMELPKCFAHEISSKWFNNRPWELIKKEKQDKILFYAIVNEYYSDFVVHPTGKIPLPYNPIIPTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1002520

Overview

Ecosystem & Geography

Associated Families

Sequences