NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1003081

Scaffold Ga0209188_1003081


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1003081 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11784
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (93.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F010245Metagenome / Metatranscriptome306Y
F061496Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100308117F000652AGCAGGMSGFQTKRQMSNDRFKGQGMKIAMVTTIIRQEIQVPDDWEREHVLDFLAEYQSFRTAFQGVSNTEQTARIVDLGVVEEEITELGEEAFDN
Ga0209188_100308120F061496GGAMSKHHLVVFANYCRDTGFTLVEAVKYVGDNYDELPNEITNAYESTYEELMQFVETQTA
Ga0209188_100308131F010245AGGLVDASTFWRYNYDMTKRTARKDSNYIIYVAEHNGSAYIGLTRKGTVSVAKAVRERWRKHISRARCEDRDWLLYQYIKAGNWTDWSHTVIDVIRGRAEAYAYERALVKAIGTELNDQYQ
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