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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027708 Open in IMG/M |
| Scaffold ID | Ga0209188_1004062 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9786 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F003521 | Metagenome / Metatranscriptome | 481 | Y |
| F004695 | Metagenome | 427 | Y |
| F006264 | Metagenome / Metatranscriptome | 377 | Y |
| F027490 | Metagenome / Metatranscriptome | 194 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209188_100406213 | F000857 | AGGAG | MQLNLNNEEARISEDYFTKGNLESGVDGVLRKNDQLYNDIKSGTWSQTFKTKNIDYKVGAIDGTRYVQYDQKNVEAVRDFCKDRREFYKIHGTDNPMFAGTAHMMQLPKCFAHEISSKWFNNRPWELIKQVKKDKILFYAIVNEYYADFVCHPSGKIPIPYNPAIPTK |
| Ga0209188_10040623 | F027490 | GAGG | MYGKVINGGAQMRKGLTKGINDKLSSRSAEDDRRDVVAGAVLKAYSVNTLSTQHTNNVSKGGKFQKPLVPKKV |
| Ga0209188_10040625 | F001059 | AGGA | MATYDIEALKLDLPNARDLAQFVYDKTQIALDLIGKPKDEQYQVAKNALEGKKIPEAFLTSENPYVDKKDLIPFDELKVLPPRNPDLPPEDSQVHFFGATNMPHPLDPQSDKKVSIDFKKYENGVITFTITAPVEQIAVGSRINKYGQTVPEKYTWLDPRTPEQILRRSDGTFTKEGRGLYTYCVGEKGSGIWSLIDREFVSISAKNIADPWA |
| Ga0209188_10040626 | F006264 | N/A | MEDYSEVFRTRLASQAEACARKTLERLQKDLQGNFQFSPDEVYYLANAAETLLRIRDLYGKK |
| Ga0209188_10040628 | F004695 | AGGA | MLDKQNIVVESLETPPANKGIEYQVAHEAYLKMVDYLRLTQGKNTLNRLSDYHYLNIAVSNSTEPIRGIDYIAPIVSPGIDYSTAVITKALMPDGKVNFEFERLSEEDAPAAMQAQQMVSYFINSKNDSYQIIRDWAQDSLLHKNGIIMVSPVREPITQYKEVEGTKDQLRSFEIMAGEKGLIAKKQQMRRIDVDLQGAMQETMMPDESEPQQEVDKSAELDEAIRNHTIYRAKYKLTGYSTNIRIKHVAQHYFVCNPTIVGIKDQDFCGFYDPMTIHEVKQQYPYIDIEEFSKHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADKFSRVVMLTTAWIRKDVDKDGEEETIEICYSGGYILYIKEVDFIPLASMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFALQASTPRMGVNPEFIDAEEIQRGVSALFILDRKFDPNKHVFEFQPMQGNLAYIQDAMQRFDADKMAMLGMTNPNDTMNPEVMKDGNSGYKLQLAMGPNQLIQDEMIKNCAIGLRDAIYIVWKTMIQYADDFNIQQLAGVMSKGQPFLDAKSMENYDFIDRAMINIDLALGFLSDENRLTRQQLIMQVQQQFAQALMQMPPEMPEMFAKLRRPYEDTLYTLGVKHCDAYLPTLEEAAKLAQVKAKQPPSPDSQETQSKVELNKAKTQESQTVSALNIKKAEDIDTDNMFEMMAAKRGKLSAVEID |
| Ga0209188_10040629 | F003521 | AGGA | MKSLVEDERGNFNKRTRSNDAKKDSDVSRKALVIENGEIASRLLKNKDFALMFNLYRFEMLERLEDSSDDSERISNAQYVAGVRDFVVFIEKQEFLAKVANKSVETLTKED |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |