NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1004300

Scaffold Ga0209188_1004300


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1004300 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9457
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006985Metagenome / Metatranscriptome360Y
F011142Metagenome / Metatranscriptome294Y
F035668Metagenome / Metatranscriptome171Y
F043286Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100430016F035668AGGTGGVSCEKCVNDTCQCNRLNAVNIWSKDYRAGKAEGQRAEASRTSDALIELERSQVISNAQLQAVLDLILEKLTDVADID
Ga0209188_100430024F006985AGGAMIREVCSCGAEFETDDRDAVELVKTWRKTHKHSDKPSKADSRESSTLTNTDVALGFQAIYDPLDDDE
Ga0209188_10043008F043286AGGAMLSMIELMQDNQVECRKCGFRWAVNAEKRGRKDLLCISCRVKPATTIQYGKLRCLPHQGKLDHNLNPIDEQGLLLLPGERVCQHRDCINPAHVVGD
Ga0209188_10043009F011142AGGAGMAVVKVSGKVSKVFGASSQGLSLVESYKSATGEDYTRTWTVWFAVSHDLQLDTEVTVFGQLSVKIEDFEDKTGKPGRKVKLDINNAQIDAVKPAVAPVVSAPF
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