NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1004701

Scaffold Ga0209188_1004701


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1004701 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8974
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019426Metagenome229Y
F028070Metagenome / Metatranscriptome192Y
F041564Metagenome / Metatranscriptome159Y
F064358Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100470115F064358AGGAMLCFSCSKQKDQIHPCLSNILEGVNLFMCQSCIDDKYEPRWVIILAGRQKGAEYVRDYIIKHRYFGRPISAEEIVA
Ga0209188_100470117F028070AGAAGMAKIRYTVDMAKKIRGIKCPVKGLKMDVRARPNYLALTVYEENVMEYNESQRMQLMEYLLLVRELIISYGSPCEIEGIKSNNV
Ga0209188_100470121F019426N/AMYKDGFPRPCLFRKEAMKVLVFGSKDWEDYNDLIRQITLLIEDNKHYYPDDKEFVFVHTGLKGAENMVTEYIGKTEKFLRQKGYKIKEELIRDKSSYSDVTLIESEPSIALVFGESPRNRQCIKLMEAMGVPYRFFAK
Ga0209188_100470124F041564GAGGLEYNPSNEEHKEIMEYLLSEGAAILEGIDEDGEPVYMFDMEILEEVMPELHAVMQEDMDQVLVDLYQKGLIDVSYDEDLNAMMTISKEGKDVLLKMGFDLSDSEDT
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